Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916406.1_cds_XP_016466106.1_58995
CDS Infomation

[gene=LOC107788888] [db_xref=GeneID:107788888] [protein=probable E3 ubiquitin-protein ligase ARI2 isoform X2] [protein_id=XP_016466106.1] [location=join(14941..15084,15947..15979,16063..16345,16750..17230,17498..18017,18159..18164)] [gbkey=CDS]
Sequence

ATGGAGGATTCTATGTATGGCAGTAGTGACGAGGAATACTATAATGGAGCGTACGATGAT
GATGAAAACGACAATGAATATGATCGTGACCCTGAACCTGAATATGATAGTGACGTGTCC
TGTGGCAAAGCTCCTTCTTGCAGGGTAATCAGGAAAGAGTCCCTTTTAGCAGCACAGAAA
GAAGATTTGCAGAGAGTGGTGGACTTGCTTTCTCTGAAGGAACATCATGCACGGACGTTG
CTTATTCATTATCAATGGGATGTTGATAAGGTCTTTGCAGTGTTTGTTGAAAGAGGGAAA
GAAAAATTGTATGCGGAAGCTGGTGTATCACTTGAAGAGAAAGATGATCAGCATCCTGCA
TCCGAGCCCTCAACTGAAATAACATGTGAAATCTGCTTTGAAGATTTCCCTGCTGAGGAA
ACGACGATGATGGATTGCAATCATAGGTTTTGCAATGATTGTTGGACGGAGTATTTCATC
GTAAAGATAAATGATGGGAAGAGTAGACGTATAACATGCATGGCTCAAAAGTGCAAAGCA
ATCTGCGATGAAGGAAAGATTAGGGATCTAGTCACTGCAAAGGATCCTAATTTGGCGGAG
AAGTTTGATCGTTTTATCCTAGAATCATATATTGAGGATAATAAGAGGGTTAAATGGTGC
CCTAGTGTTCCTCATTGTGGAAATGCAATTCGTGTTGAGGATGACGAGTACTGTGAAGTT
GAATGTGCATGTGGTAAACAATTCTGTTTCAATTGCTTGTGTGAACTGCACTCACCCTGT
TCATGTGTGATGTGGGACCTTTGGCTTAAGAAGTGCGACGATGAAGCACCAACCGTCACT
TGGATGTCAGAGAAAACCAAGCATTGTCCCAAATGTCATAAAATTGTCGAAAAGGATGGA
GGTTGCAACCTTGTACAGTGTATATGTGGACAGCCATTTTGTTGGCTCTGTGGTGAAGCT
ACTGGACTAGAACATTCATGGAGTAGTATACAAGGTCACACTTGTGGCAGATACAAAGAA
AGCCATTTGAAAAGTGCAGATACCATAGAGGACTATTGGCGCCTTACTCACTATTATCGT
CGCTATAAGGCTCATATTGATTCATTGAAGATTGAAGCATCTGAATCAAAGCCAAAAATA
CTTGATAAAGTCCGTAGTCTCGAAGCAAAGGAATTGCAGTTAAAAGATTTCAGCTGGGCA
ATGAGTGGATTTGATAGACTCTCCTTATCAAGGCGAGCTGTCGCATGTTCCTATCCATTT
GCATACTACTATTTTGGTGATCTTTTCGCAAATGAAATCACAAAAGAGGAAAGGCAAATA
AAGCAAAACCTTTTTGAGGATCAGCAACAGCAACTTGAAACAAATATTGAAAGACTTTCA
ATGTTTTTAGAAGAGCTATTTGCTAACTATCCTGAAGATAAACTTATGGAGACAAGAATG
AAGATCATTACTCTCTCCACGGTATGA

Peptide Sequence

PEP ID

XP_016466106.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI2 isoform X2 [Nicotiana tabacum]
Sequence

MEDSMYGSSDEEYYNGAYDDDENDNEYDRDPEPEYDSDVSCGKAPSCRVIRKESLLAAQK
EDLQRVVDLLSLKEHHARTLLIHYQWDVDKVFAVFVERGKEKLYAEAGVSLEEKDDQHPA
SEPSTEITCEICFEDFPAEETTMMDCNHRFCNDCWTEYFIVKINDGKSRRITCMAQKCKA
ICDEGKIRDLVTAKDPNLAEKFDRFILESYIEDNKRVKWCPSVPHCGNAIRVEDDEYCEV
ECACGKQFCFNCLCELHSPCSCVMWDLWLKKCDDEAPTVTWMSEKTKHCPKCHKIVEKDG
GCNLVQCICGQPFCWLCGEATGLEHSWSSIQGHTCGRYKESHLKSADTIEDYWRLTHYYR
RYKAHIDSLKIEASESKPKILDKVRSLEAKELQLKDFSWAMSGFDRLSLSRRAVACSYPF
AYYYFGDLFANEITKEERQIKQNLFEDQQQQLETNIERLSMFLEELFANYPEDKLMETRM
KIITLSTV

Transcript Sequence

Gene sequence data has not been registered.